kudoa-in-swordfish

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This repository contains the code for our paper:

Bolin JA, Evans KJ, Schoeman DS, Moore II TS, Spillman CM, Hartog JR, Cummins, SF and Scales KL. 2024. A warming western boundary current increases the prevalence of commercially disruptive parasites in broadbill swordfish. Fisheries Oceanography. In press.

Relevant manuscripts:


Contents

This repo is organised as follows:

kudoa-in-swordfish
├── figures             <--- .png files of figures in main text   
├── figure_scripts      <--- code to generate figures in main text (outputs in \figures)  
├── functions           <--- bespoke functions used in \scripts   
└── scripts             <--- code used in the analysis 
└── supplement          <--- supplementary materials for the manuscript 

Notes

  • Machine specifications used for the analysis are found in \supplement\Appendix_S1.pdf.
  • R package versions are documented in a project-local library within the lockfile: renv.lock.

Questions or feedback?

Please submit an issue, or email your questions to J.Bolin (jessica.anne.bolin(at)gmail.com).