kudoa-in-swordfish
This repository contains the code for our paper:
Bolin JA, Evans KJ, Schoeman DS, Moore II TS, Spillman CM, Hartog JR, Cummins, SF and Scales KL. 2024. A warming western boundary current increases the prevalence of commercially disruptive parasites in broadbill swordfish. Fisheries Oceanography. In press.
Relevant manuscripts:
- Bolin J, Schoeman D, Evans K, Cummins S, Scales K. 2021, Achieving sustainable and
climate-resilient fisheries requires marine ecosystem forecasts to
include fish condition. Fish and Fisheries.
- Bolin J, Cummins S, Mitu S, Schoeman D, Evans K, Scales K. 2021, First report of Kudoa thunni and Kudoa musculoliquefaciens affecting the quality of commercially harvested yellowfin tuna and broadbill swordfish in Eastern Australia. Parasitology Research.
Contents
This repo is organised as follows:
kudoa-in-swordfish
├── figures <--- .png files of figures in main text
├── figure_scripts <--- code to generate figures in main text (outputs in \figures)
├── functions <--- bespoke functions used in \scripts
└── scripts <--- code used in the analysis
└── supplement <--- supplementary materials for the manuscript Notes
- Machine specifications used for the analysis are found in
\supplement\Appendix_S1.pdf. - R package versions are documented in a project-local library within
the lockfile:
renv.lock.
Questions or feedback?
Please submit an issue, or email your questions to J.Bolin (jessica.anne.bolin(at)gmail.com).
